In the capital, Caracas, police used tear gas to prevent demonstrators reaching the offices of the national ombudsman.
April 8 protest came after a week of anti-government demonstrations.
They were initially sparked by a Supreme Court ruling to curb the powers of the national assembly, a move which was later overturned.
Security police fired tear gas on one major avenue in Caracas while in the city of San Cristobal they shot rubber bullets towards protestors.
Many demonstrators carried signs reading “No to dictatorship!” and “Capriles for President”.
In the Caracas protest there was a moment of silence in memory of a young man shot dead on April 6 by police during demonstrations.
Henrique Capriles has been at the forefront of demands for a recall referendum on President Nicolas Maduro.
A former presidential candidate who has run twice, Henrique Capriles is seen as the oppositions’ best hope of defeating Nicolas Maduro in elections scheduled for next year.
The ruling by the Venezuelan comptroller said the ban on Henrique Capriles was due to “administrative irregularities” in his role as governor.
He is the latest in a series of prominent opposition politicians to be put out of action.
Two years ago, Maria Corina Machado, a former congresswoman was banned from office as was a former mayor, Daniel Ceballos.
In 2015, another prominent opposition leader, Leopoldo Lopez, was sentenced to nearly 14 years in prison on charges of inciting violence during anti-government protests in 2014.
Venezuelans are dealing with the effects of a harsh economic crisis that has millions skipping meals, unable to afford soaring prices for basic goods and facing long lines for scarce products.
President Maduro’s socialist government have said that a US-backed business elite is responsible for Venezuela’s economic downturn and that it is trying to organize a coup to impose right-wing rule.
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