Caught on an open microphone, David Chalian was discussing Hurricane Isaac, which hit Louisiana with the Republican convention under way.
Yahoo said the remark did not represent the company’s views and that it had apologized to the Romney campaign.
David Chalian said on Wednesday he was “profoundly sorry”.
His gaffe came on Tuesday evening, as Yahoo News was preparing to begin its live coverage of the Republican National Convention in Tampa, Florida, in association with ABC News.
In a video posted on YouTube, the commentators can be heard discussing how Isaac, which has since been downgraded to a tropical storm, was bearing down on the US Gulf Coast.
As footage is broadcast of Mitt Romney and his wife Ann, one voice can be heard saying: “They’re not concerned at all.”
Laughter is heard in the background as David Chalian says: “They are happy to have a party with black people drowning.”
He later apologized on his Facebook page for “making an inappropriate and thoughtless joke”.
“I was commenting on the challenge of staging a convention during a hurricane and about campaign optics,” he said.
A Yahoo spokeswoman told the Associated Press: “He has been terminated effective immediately.
“We have already reached out to the Romney campaign, and we apologize to Mitt Romney, his staff, their supporters and anyone who was offended.”
Mitt Romney was officially selected as the Republican presidential nominee on Tuesday, the first full day of the convention, which started a day late amid concerns over Isaac.
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